Since I didn't really find much info on whether or not my issue was due to not programming after swapping the JBE, I wanted to confirm that it was exactly because of this. I had another problem I was not aware of like my windshield wipers not working due to this swap. My Comfort Access was also starting to get wonky.
So yea there it is, it definitely needs to be programmed. I also got my TAs done....IMG and Corry, the best