I have a pretty annoying rattle coming from the driver's side door/window area, when I hit bumps or rough'ish road, wind noise as well from the driver's side window and maybe front the front window... It's pretty annoying. I have other's that come and go. Been meaning to have the dealer look at the driver's door, but I'm leery to let them mess with it. I threw some of that 1Z gummi flage (sp?) stick stuff on my seals, but no improvement.
Mine creeks as well when going into driveways, worse when I go in at an angle (which I have to do some places to prevent scraping).
I have a small area of fairly deep scratches (in different directions) on the left rear corner of my sunroof, they haven't gotten worse, but I've yet to figure out how they got there.